FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400124
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14140.35339044896082217No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10530.26316841779048494No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8640.21593306075116714No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6900.17244654157211264No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5760.14395537383411142No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5370.1342083953974268No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4520.11296498085593466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)