FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401224
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13470.3357226885729667No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5890.14680078958387333No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5360.13359121089466233No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5200.12960341355452318No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4960.12362171754431439No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4200.10467968017865333No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG4090.10193806950730765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)