FastQCFastQC Report
Sun 21 May 2023
EGAF00007935924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401224
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66091.6472095388112376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13090.32625166989013615No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.14804697625266683No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5300.13209578689211016No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4960.12362171754431439No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4750.11838773353538172No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4480.11165832552389689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)