FastQCFastQC Report
Wed 31 May 2023
EGAF00007935926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442335
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26950.6092667322278364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23600.5335322775724282No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15870.3587778493675608No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG10610.2398634519086213No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9650.21816044400737No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9170.2073089400567443No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6480.14649530333344638No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6190.1399391863632767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)