FastQCFastQC Report
Wed 31 May 2023
EGAF00007935927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400893
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17530.4372737862721474No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11710.2920978914573215No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10860.2708952264070463No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10170.2536836512485875No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7030.17535851212168832No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6180.15415584707141305No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5960.14866809847016535No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5910.1474208828789727No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5420.1351981700852846No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5180.12921153524755982No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5120.12771487653812863No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5100.12721599030165157No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4960.1237237866463121No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4410.11000441514319283No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4040.10077501976836713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)