FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400893
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26170.6527926404302395No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20370.5081156318518907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17640.4400176605727713No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10960.27338965758943157No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6820.17012020663867913No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6500.1621380268550461No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.16089081126385343No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5940.14816921223368829No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5870.14642311040601858No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5350.13345206825761485No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5230.1304587508387525No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5060.12621821782869744No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5010.12497100223750478No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4980.12422267288278918No Hit
GTTCTGGTGCTGAACGAGCAGTCCGCATACC4520.11274828944381668No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4480.11175051697086257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)