FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432237
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14800.3424047455446896No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13040.3016863433718076No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12950.2996041523516034No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11970.27693140568715774No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10030.23204862147386734No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9740.22533933929765382No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9620.22256308460404825No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8950.20706232923141704No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8140.1883226100495793No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7950.18392687345137043No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7650.17698623671735644No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6960.1610227722291243No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6660.15408213549511032No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6620.15315671726390845No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6430.1487609806656996No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6200.1434398258362889No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5960.1378873164490777No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5600.12955855236826094No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5440.12585687944345347No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5360.12400604298104974No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4850.11220696053322599No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4620.10688580570381526No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4550.10526632379921201No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4350.10063923264320268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)