FastQCFastQC Report
Sun 21 May 2023
EGAF00007935930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432237
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62721.4510557865245224No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15160.35073350962550637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13950.32273960813165No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13570.3139481349352323No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12700.29382028840659175No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12230.28294662418996985No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12200.2822525605165685No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10680.24708666773089763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9710.22464527562425243No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8990.2079877474626189No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8940.20683097467361655No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8430.19503189222579279No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8040.18600906447157464No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7470.17282185467694808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7380.17073966365674387No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7370.1705083090989434No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7350.17004559998334245No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7000.16194819046032619No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6790.15708974474651638No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5370.12423739753885021No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5350.12377468842324929No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5190.12007301549844182No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5050.1168340516892353No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4710.10896799672401947No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4570.10572903291481293No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4450.10295277822120735No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4420.10225871454780594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)