FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427784
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11080.25900921960615636No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5430.126933218633703No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5340.12482935313148692No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5270.12319301329642997No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4830.11290744861892918No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4640.10846595478091747No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4480.10472574944364445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)