FastQCFastQC Report
Wed 31 May 2023
EGAF00007935934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394423
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60871.5432670001495856No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53701.361482469328614No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31980.8108046437454206No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19870.5037738671426363No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19390.49160419143914025No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17820.4517992104922887No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16250.41199422954543724No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14210.3602731078055793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13690.3470892924601253No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12920.3275671043524338No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12680.32148226650068584No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11920.30221361330348384No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11040.27990254118040786No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9200.23325211765033985No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9000.22818141944054987No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8840.22412486087271788No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8620.21854709284194884No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8450.2142369993636274No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8380.21246225499020088No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8330.21119458043775338No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG8130.20612388222796338No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8080.2048562076755159No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7600.1926865319720199No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7330.1858410893888034No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7320.18558755447831388No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6970.1767138326111814No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6820.1729108089538389No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6270.1589663888769164No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5620.14248661969509893No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5320.13488057238041393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5250.13310582800698742No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5160.1308240138125819No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4910.12448564105034443No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4520.11459777954125393No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4500.11409070972027494No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4420.11206243043635894No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4240.10749880204754794No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4000.10141396419579994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)