FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457567
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTCGGTTTCTGGGACGCCAGGGTCCATTCGATCCATGGCT277526.065122703341806No Hit
ACGTACACCGGGTAACGGGAATAGCTTTCTTCCATAACGATGTC172763.775621930777351No Hit
TGCCTTCTGACGTTGGGCTTCTGCAATCAGGTGGCCCAGGTTGG109152.3854430061608465No Hit
AGCCAGGCCTACCAGACCGTATTTTGCACGGAAACGCAGGCCGT93312.0392641951889012No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT79231.7315496965471724No Hit
CCATTCGGTGCGACCCAGTGGCTGGGATTCGTAGGAGCTACGGT72761.590149639287798No Hit
AACCTGCTTACCGTTAGTTTTCATACGGTAGGAGAACCAGCCTG66071.4439415429871472No Hit
TTCATCGAAAACAGAGGCCAGCATGGTATACAGCTCTGGGTTGG63161.3803442993048012No Hit
TGCGGTACAAACCAGGACCAGGTACTGTGCATTGTTGAAGCTAC51471.1248625884296726No Hit
GGCACGGCGCAGGCCACGCAGCTGGTACGGGATGTTTTTAGTTT42480.928388629424762No Hit
AGCAGCAAATTCCTGGGCGTCACGGTAATCGCGGTTTTCCATTT31990.6991325860475078No Hit
GCCAAAGGTAACCGGCATACGGTATTTAATGTCGGACTGCGCGT26860.5870178574940937No Hit
TTCGTCCGGCTGCAGCAGACCGAAACGGGTACGCAGATCGTCTT25920.5664744179540919No Hit
AACCAGGATCGGTTCGCCCGGTTCACCATCAGAGCGGGCGGAGC23730.5186125747704707No Hit
CATCTCACCGAACGGTTTCACGGTGCAAACCAGGTAATAATCGT21510.47009508989940274No Hit
ATCAGAGGAATAGATGTGGTAACCAGTTCTTCCAGCGGCGGTTC20140.44015411950599587No Hit
TTCGTCGATTTCTTCCAGAGAAACCAGGTCGTAGCGACGGTGGG15220.33262888276470987No Hit
GGACATAGCACCGTCGAAAATCAGGGTCGCTTTCTTACCTTTTT14150.30924432924577167No Hit
GAAACCCTGGTTGGCAACCGCAGATTCGTAACCCTGATCATAGA10930.23887212145980805No Hit
GATGCAACGCTGCAGGTTCGGTTGAATCGATATCGCCGCTCATT10830.2366866491683185No Hit
CTTACCGGAGTCCTTCAGACCACGGATGACAGTGCCAACGCCAC10130.22138834312789166No Hit
GTTACGGGTAGACGGGCTCTGGACGTCACCAACGCCGGAAATAC8610.18816916429725047No Hit
ACGTACTTCCCTTGACCATGAATTAGCGCAATCAGCCGTTGTAG7930.1733079527151215No Hit
ACCCTGGTAACCTGCATCCAGCAGAGAGTTCAGCGGTTCGATCG7480.1634733274034185No Hit
TTCCAGTTTGTCCGCCTGTTCCATCCAAGCACGCAGCATCTCGT6170.13484364038490537No Hit
ACCCTCCAGCGCCAGCAGACCGCCGCCGGTACGGGAGTCCGGCA6040.13200252640596896No Hit
AGACGGAGATTCGTATACGAAAGACTCGTCGCTGACAGTCTGGA5550.12129371217767017No Hit
ACCCTGCGCTACCACCATGTCACCGTGGATCAGTGGTTCGGAAC5520.12063807049022329No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4790.10468412276234955No Hit
CAGAACCAGCGGTTCGTCACCCTCTTTTTCGTAGTCCACCAGGG4690.10249865047086001No Hit
CATACCGTTCATCTGCGGCATACCCATATTGCCCATCTGGTTCA4670.10206155601256209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)