FastQCFastQC Report
Sun 21 May 2023
EGAF00007935936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457567
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACAAAGTATACACCAAGGTGATGGGTC277156.057036455863294No Hit
TCTCACGAACAGGGTGTAATTGCAGAAAACG167893.6691894301818095No Hit
AACTACGCGGAGGAAATCCCGCAGGATCCGG108632.374078550245101No Hit
TCTGCATGCACCGGTATCTCCTTCCTGGCGG91091.9907467103178331No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT76451.6707935668437628No Hit
GAGATGACTTTCGCTGGCAAATACGATGAAC71121.5543078937073695No Hit
GCTAAAGAAGAAAAAGAGCGTGCCGCGCTGG65901.440226240091615No Hit
CTGGGCATCCGCGTGATCCCGGAAATTTCTC62481.3654830877226722No Hit
ACCGCTCAGAGCGACTACTTCCTGTCTTACT50731.10869009347265No Hit
CAGGTGGTTTATGGCCTGCTGGACAAACTGA41430.9054411703641215No Hit
TGCAACGGCATCCTGAAGGAACTGCTGTCCA31480.6879866773609111No Hit
GTGTCCGGCGAGGTAAACGGCCACGCAGTTC25810.5640703984334534No Hit
GGTACCTTCTCCTCTAGCACTTCTATGGATG25640.5603550955379212No Hit
AACGAAAAATGGCGTAAATATAAACTGACCG23220.507466666083874No Hit
AAAGACGTACTGGCTCCGGGCCACCCGTTCC21320.4659426925455725No Hit
GAGGTGCGCAGCAAATCCGACCCAATTATGC19690.4303194941942929No Hit
GGCCCGTTCTCTATCAACAACGACAAACAGG17530.3831132926981185No Hit
GGCATCTATTTCAAACCGGAACTGATGCCGA14970.327165202035986No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14590.3188604073283257No Hit
AACCTGATGCGCATCGACGGTAACCCGGCCA10800.23603100748087166No Hit
GACTTCGGCCGCTACGCGACCGGTGATGGTA10680.2334084407310842No Hit
GAATTTATTAACGGTCTAGCCAGCCGTTCAT10000.21854722914895525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8820.1927586561093785No Hit
CCAGCGGAAGTACGCGTGTTGGTGTAACCGT8240.1800829168187391No Hit
GTTTCCGGTCTGATTTGCCGTAAAGCACAGC7840.1713410276527809No Hit
AACTACGGCACCCTGGGCTACATCCACAACA7390.1615064023410779No Hit
CTGACCGTTCCAGACATGATACTCACATTGG6020.13156543194767106No Hit
ATGGCTCGCTTCGTTTCTGAAGAAAAAGCAT5810.12697594013554298No Hit
CTGGACGTTCTGTACTCCACCGTGGAAAACG5610.12260499555256389No Hit
GACGCGTGCCCGCAGCTGAAAACCACTGCAC5560.1215122594068191No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4710.10293574492915793No Hit
GATCAAGCTGCTACCCAGCCGGAATCCATCC4690.10249865047086001No Hit
ATGGTTGTAGACAAGCTGGGTATTTACTATG4640.10140591432511524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)