FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411835
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36050.8753505651535203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14480.3515971202059077No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7950.19303847414619932No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7930.19255284276469944No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7770.18866779171270048No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7480.18162613668095234No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6630.16098680296720774No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6570.15952990882270812No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6550.15904427744120825No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6550.15904427744120825No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6510.1580730146782085No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6220.15103135964646036No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6160.14957446550196074No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5970.14496096737771194No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5820.1413187320164629No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5180.125778527808467No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5160.12529289642696712No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5080.12335037090096762No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4890.11873687277671884No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4850.11776561001371909No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4470.10853861376522152No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4450.10805298238372163No Hit
ATCAAAGACCTGCAGGCACAGGTGGTAGAAA4380.10635327254847207No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4270.1036822999502228No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4180.10149695873347335No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4150.10076851166122354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)