FastQCFastQC Report
Sun 21 May 2023
EGAF00007935940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387209
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56001.446247375448401No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33340.8610337053116017No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7400.19111126032711018No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6910.17845659579193665No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6860.17716530349242915No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6840.17664878657262614No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6210.16037850359883166No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6210.16037850359883166No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5980.15443855902109713No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5980.15443855902109713No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5950.15366378364139263No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5950.15366378364139263No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5920.15288900826168814No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5440.14049260218641613No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5290.13661872528789362No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5000.1291292299507501No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4710.12163973461360661No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4690.1211232176938036No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4370.11285894697695559No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4180.1079520362388271No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4120.1064024854794181No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4100.10588596855961509No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4030.10407815934030458No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3990.1030451255006986No Hit

[OK]Adapter Content

Adapter graph