FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389033
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61271.5749306614091865No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42221.0852549783694443No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20740.5331167278868373No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16090.41358959265666406No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14130.3632082625381394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12860.33056321700215663No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12230.314369218035488No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11750.3020309331085024No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10220.26270264990373565No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10060.2585898882614071No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9680.24882207936087683No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8950.23005760436775285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8900.2287723663545252No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8630.22183208108309577No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG7770.19972598725557988No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7410.19047227356034066No Hit
CGCGATAACAACATTGAACGTGACAACAATA7010.18019036945451927No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6770.17402122699102646No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6230.16014065644816763No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6010.1544856091899659No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5890.15140103795821946No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5730.14728827631589092No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5620.14446075268679007No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5550.14266141946827132No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5360.1377775150180062No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5330.1370063722100696No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5280.13572113419684192No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5070.1303231345412857No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4760.12235465885927414No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4740.12184056365398307No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4730.12158351605133756No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4650.11952713523017329No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4640.11927008762752775No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4530.11644256399842687No Hit
CCGGGCATCGGCAAACCGGGCGGTCCGGGTC4250.10924523112435193No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG4160.10693180270054212No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4160.10693180270054212No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4030.10359018386615017No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3920.1007626602370493No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA3920.1007626602370493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)