FastQCFastQC Report
Sun 21 May 2023
EGAF00007935948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547768
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50900.929225511530429No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12150.2218092331059865No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8290.15134144382293233No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8190.1495158534269983No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8090.14769026303106425No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7890.14403908223919615No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7720.14093557856610828No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7710.1407530195265149No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6650.121401761329614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)