FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568793
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10920.1919854850534377No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9020.15858141714120955No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8660.15225222532626104No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8230.14469235732507257No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8030.14117613965010117No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7350.12922099955519847No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7130.12535316011272996No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.10302517787666163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)