FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539965
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33560.6215217652996028No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC33330.6172622299593492No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31330.5802227922180141No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26200.4852166344114896No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21830.40428546294667245No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20650.38243219467928474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17770.32909540433176226No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16370.30316779791282766No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16000.2963155019306807No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13000.24075634531867807No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12230.22649616178826407No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11110.2057540766531164No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10800.2000129638032095No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10710.19834618910484939No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10380.1922346818775291No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9960.18445639995184873No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9710.17982647023418186No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8970.16612187826988786No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8490.15723241321196746No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8380.155195244136194No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7550.13982387747353994No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7500.13889789153000656No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7450.1379719055864732No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7310.13537914494457975No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6660.12334132767864583No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6400.11852620077227227No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6180.11445186262072542No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6050.11204429916753862No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5930.10982193290305853No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5890.10908114414823183No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5750.10648838350633837No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5710.10574759475151167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)