FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522499
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33390.6390442852522206No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC31980.6120585876719381No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29940.5730154507472741No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA25210.48248896170136213No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20920.40038354140390703No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19790.3787567057544608No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16400.3138761988061221No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15920.30468957835326No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15080.28861299256075135No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12770.24440238163135242No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12270.2348329853262877No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10650.20382814129787807No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10470.20038315862805478No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10230.19578984840162372No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9730.18622045209655905No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9550.18277546942673573No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8990.17205774556506326No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8770.16784721119083482No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8740.16727304741253093No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8370.16019169414678305No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8000.15311034088103517No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6870.13148350523158894No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6680.12784713463566436No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6480.12401937611363849No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6420.12287104855703074No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5950.11387581603026992No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5750.11004805750824402No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5710.10928250580383884No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5710.10928250580383884No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5710.10928250580383884No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5670.10851695409943368No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5470.1046891955774078No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5450.10430641972520521No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5430.10392364387300262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)