FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441721
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13820.3128671718120714No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12150.2750605019910758No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11170.25287455203624004No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9570.21665259292630415No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8450.19129722154934903No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7570.17137514403888426No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6680.15122667928398242No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6490.14692532163967753No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5520.1249657589292789No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5440.12315466097378211No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5020.11364639670742391No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4480.10142148550782056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)