FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441721
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45731.0352688688108558No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28530.6458828083790447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14160.3205643381229328No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11540.26125088008041275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11020.2494787433696836No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10050.22751918065928492No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10010.22661363168153653No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9710.21982201434842358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6230.14103925328431297No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5740.12994627830689506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.12700324412921277No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5100.11545749466292071No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4720.10685477937431094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)