FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546665
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25260.4620745794956692No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19370.3543303485681359No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16790.30713508272891077No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16050.29359845609285395No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12300.22500068597770115No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10450.1911591193875591No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9920.18146396787795085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.17798834752544979No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9270.1695736877246577No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8870.16225659224570807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8750.16006146360202317No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8070.14762240128780882No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7710.14103701535675411No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7710.14103701535675411No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7200.13170771862109337No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6990.12786624349464482No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6880.12585404223793364No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6190.11323205253674554No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6060.1108539965060869No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6000.10975643218424447No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5820.10646373921871712No Hit

[OK]Adapter Content

Adapter graph