FastQCFastQC Report
Sun 21 May 2023
EGAF00007935960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558277
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51020.9138832515041816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21700.3886959340972313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15720.2815806490326487No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14400.2579364723963194No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12450.22300757509265112No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11190.2004381337579732No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10820.19381059939779No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9960.1784060600741209No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA9840.17625658947081826No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9380.16801695215815804No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8750.15673223149081908No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8730.15637398639026864No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8660.1551201285383421No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8570.15350802558586507No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8480.1518959226333881No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8120.14544751082348012No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7490.13416279015614113No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7300.1307594617009119No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7080.12681876559485702No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7050.12628139794403137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6900.12359455968990304No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6840.12251982438825171No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6570.11768351553082072No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6190.1108768586203623No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6190.1108768586203623No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6150.11016036841926141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)