FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564563
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21920.3882649057766804No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18320.32449877161627666No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13290.23540331194215705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11920.2111367553311145No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10950.19395532473789462No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10870.19253829953433008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10270.18191061050759613No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8690.15392436273719673No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8250.14613072411759184No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7540.13355462543595667No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7260.1285950372234808No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7080.1254067305154606No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6010.10645401841778508No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5870.10397422431154715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)