FastQCFastQC Report
Sun 21 May 2023
EGAF00007935967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536426
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG16580.3090827066547856No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15140.28223837025050985No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14590.27198532509609896No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT12360.23041388747003316No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT12280.22892253544757338No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11940.2225842893521194No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT11510.21456827223139818No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8910.16609933150145592No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8320.15510061033581518No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG8100.15099939227405085No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7940.14801668822913133No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7900.14727101221790145No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT7020.13086613997084406No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6940.1293747879483843No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT6920.12900194994276937No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT6780.1263920839034648No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6360.11856248578555104No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6200.11557978174063152No Hit
GCCGCGGGTAATCTGGATCAGACGGTCAGAGTAGCCGCAGGCTT5850.10905511664237005No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5590.10420822256937583No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5510.10271687054691607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)