FastQCFastQC Report
Sun 21 May 2023
EGAF00007935968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536426
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50370.9389925171412273No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC17950.33462211003940895No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15710.2928642534105357No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15380.2867124263178891No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14970.27906924720278287No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14180.2643421459809927No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG12840.23936199960479168No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG12660.23600645755425725No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT11580.21587320525105047No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9040.16852277853795303No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8760.16330304645934388No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8330.15528702933862265No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8050.1500672972600135No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG7940.14801668822913133No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7810.1455932411926342No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7010.1306797209680366No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6870.12806985492873202No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC6790.12657850290627223No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT6770.12620566490065732No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG6690.12471431287819756No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6470.12061309481643322No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6390.11912174279397345No Hit
GACGCAGCTTCCTCTGGTGCGAGCCGTCTGG5980.11147856367886717No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5820.10849585963394764No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5710.10644525060306546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)