FastQCFastQC Report
Sun 21 May 2023
EGAF00007935970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556700
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29180.5241602299263517No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23500.4221304113526136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20560.3693192024429675No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20170.3623136339141369No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16380.29423387821088554No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14500.26046344530267646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13590.24411711873540504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12350.2218430034129693No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10900.19579665888270165No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10690.19202442967486977No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10450.18771331058020477No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10140.18214478174959584No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9560.17172624393748878No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9040.16238548589904794No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8810.1582539967666607No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8510.15286509789832944No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8070.14496137955811028No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7870.14136878031255615No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7650.13741692114244655No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7500.13472247170828094No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7120.12789653314172802No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7070.1269983833303395No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6860.12322615412250763No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6760.12142985449973055No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6750.12125022453745285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6340.11388539608406684No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5990.10759834740434705No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5740.10310759834740435No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5680.10202981857373809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)