FastQCFastQC Report
Wed 31 May 2023
EGAF00007935974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548068
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49890.910288504346176No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26720.48753074436018884No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14410.2629235788259851No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11130.20307699044644095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10710.1954137077880847No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9200.1678623820401848No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.13301269185575512No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6620.12078793142456774No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6180.11275973054438501No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6020.10984038476977309No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5490.10017005189137114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)