FastQCFastQC Report
Wed 31 May 2023
EGAF00007935975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498996
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22440.4497030036312916No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21040.42164666650634475No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13940.2793609568012569No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12110.24268731613079061No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11020.22084345365493913No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10810.2166350030861971No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9470.1897810804094622No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8900.1783581431514481No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8410.1685384251577167No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7960.15952031679612663No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7610.1525062325148899No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7330.14689496508990052No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7000.14028168562473445No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6530.13086277244707373No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6520.13066237003903838No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6400.12825754114261437No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6360.12745593151047302No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6120.12264627371762499No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6120.12264627371762499No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5960.11943983518905962No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5510.11042172682746956No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5320.1066140810747982No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5170.10360804495426817No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4990.10000080160963215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)