FastQCFastQC Report
Sun 21 May 2023
EGAF00007935976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498996
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28200.5651347906596446No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22800.45691749032056367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14930.2992007951967551No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13640.27334888456019685No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12030.24108409686650795No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10830.21703580790226776No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9900.19839838395498158No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9590.19218590930588622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9340.18717584910500285No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9080.18196538649608412No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8620.17274687572645872No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8370.16773681552557537No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7920.15871870716398528No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7210.1444901361934765No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7080.14188490488901714No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6970.13968047840062844No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6910.13847806395241644No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6830.13687484468813377No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6700.1342696133836744No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6690.1340692109756391No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6600.13226558930332105No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6370.12765633391850836No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6230.12485070020601369No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6130.12284667612566032No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6040.1210430544533423No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5570.11162414127568157No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5460.10941971478729288No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5390.10801689793104555No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5220.10461005699444485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)