FastQCFastQC Report
Sun 21 May 2023
EGAF00007935978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486026
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45830.942953669145272No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19220.3954520951554032No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.228588594025834No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7230.1487574738799982No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4880.10040615111125742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)