FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544891
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25160.4617437248917673No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20380.3740197580800564No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16750.3074009297272298No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16220.29767421374183095No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15110.27730316705542946No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10590.19435079676485756No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10310.18921215435747699No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9830.18040305308768176No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8480.15562745576638265No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8310.15250756573333016No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8310.15250756573333016No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7790.14296437269105197No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7510.13782573028367143No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7430.13635754673870554No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7200.13213651904692866No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7090.13011776667260058No Hit
CAGACGGCCACGCAGGGAGTCACCTTCCTGCAGAGACACTTCGG6910.12681435369642735No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6170.11323365590549303No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5980.10974671998619906No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5730.10515864640818072No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5650.10369046286321484No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5510.10112114165952456No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5510.10112114165952456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)