FastQCFastQC Report
Wed 31 May 2023
EGAF00007935984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544891
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34490.6329706308234124No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23040.4228368609501717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20530.37677260222686737No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18590.341169151261445No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17540.32189924223376787No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16550.3037304708648152No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16010.29382023193629553No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11280.20701387984018824No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10240.18792749375563186No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8910.1635189423205742No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8880.16296837349121202No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8870.16278485054809128No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8160.14975472158651912No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8120.1490206298140362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7660.14057857443048244No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7520.13800925322679214No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA7320.13433879436437746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7090.13011776667260058No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6560.12039105068720167No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6520.11965695891471871No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6450.11837229831287359No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6310.1158029771091833No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6270.11506888533670037No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6080.11158194941740641No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5970.10956319704307833No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5750.10552569229442217No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5530.10148818754576604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)