FastQCFastQC Report
Sun 21 May 2023
EGAF00007935985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517358
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC44860.8670978316755515No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG43760.8458359588524774No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT39250.7586622802778733No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA34640.669555704173899No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG33990.6569918702329914No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG30690.593206251763769No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA27520.531933400082728No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA24990.4830310925896575No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA23030.445146301013998No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT22960.4437932727434387No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20270.39179832920337565No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG19700.38078081328596447No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC19190.37092303588617553No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT18720.3618384174981348No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG15570.3009521453229678No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT14880.28761515237031227No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT14510.2804634315116418No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT14360.27756408521758624No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13930.26925262584129367No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13400.25900826893563067No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12150.23484704981850094No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA11680.22576243143046015No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11360.21957715933647493No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA10840.20952609218374899No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10350.2000548942898341No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9790.18923066812536No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA9400.18169236776081554No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG9040.17473393665508216No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8820.17048156209046733No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG8780.16970840307871918No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG8740.16893524406697105No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8700.1681620850552229No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC8380.16197681296123767No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC7830.15134587654970058No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7510.14516060445571538No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7440.14380757618515613No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7330.1416813889028487No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7160.13839546310291906No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC7120.1376223040911709No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG7100.13723572458529684No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7090.13704243483235978No Hit
TGGGTCTTGAGACCACGGTGCCCAAGGGTGGCGATAGCACGGGT7030.13588269631473757No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6670.1289242652090042No Hit
GTTCAGGCCGCGAATACCGAAGTTCATAGCCAGGTCGTGAGAAC6570.12699136767963382No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6000.11597385176222268No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5920.11442753373872637No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5870.11346108497404118No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5830.11268792596229303No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5780.11172147719760783No Hit
ATCGTCGAACGGGATATACTGCACGAAGCCGTCGTAAGCGGTAA5740.11094831818585968No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5700.11017515917411155No Hit
CTCTGGATTTAAATATGTCTATCAGGTGGACGGGCCTTCACCTG5680.10978857966823746No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA5660.1094020001623634No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5550.10727581288005597No Hit
CGGCAGTGGGTCCAGGAAGTGCAGTGGCTGCAGCTGCGGCTGTT5460.10553620510362265No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5380.10398988708012634No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5350.10341001782131522No Hit
CGGGATAGTGCCGTTGTCGCCGCCGGTCAGTTTGGTCAGCGGAA5330.10302343831544115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)