FastQCFastQC Report
Sun 21 May 2023
EGAF00007935988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538857
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC68061.2630438131081159No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC47980.8904032053030766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG42620.7909334016260344No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA41210.7647669047632303No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC37180.6899789740135138No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC35020.6498941277556012No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT33190.6159333552315364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG30900.5734359950784716No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC27260.5058856060142116No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG26800.4973490183852116No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC26030.4830595130062336No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG23820.44204677678864707No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21560.4001061506113867No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20220.37523869969212614No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC18430.3420202391358004No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16970.31492585231332243No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC16860.31288449440203986No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG16160.29989403496660527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15720.2917286033214749No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT15160.2813362357731272No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14980.27799583191830113No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT14550.2700159782651056No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14400.26723230838608386No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG13110.2432927474264972No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG12950.2403234995555407No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC12390.229931132007193No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11920.22120896638625834No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT10920.20265116719278028No Hit
TCCCCGACCCAGCCGATCAGCCACGAAGAAC10420.19337226759604126No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10300.19114533169282388No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10170.18873281779767173No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9900.18372221201543268No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG9550.17722698229771536No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9210.1709173305719328No Hit
AGCCCGACCCAACCGATCTCTCACGAAGAAC9050.16794808270097633No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT8780.16293747691873725No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8760.1625663209348677No Hit
GGTTACCAGGAACCGCCGGCCCCGCAGGCAC8410.15607109121715038No Hit
CCGCCTGCGCCGCAGGCGCCGTACCAGGGCT8070.14976143949136783No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA8050.14939028350749828No Hit
GGTGACGCGCGTGAAAACGACGTGTTCGAAC7580.1406681178865636No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.1404825398946288No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7300.13547193411238975No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6900.12804881443499852No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA6720.12470841058017247No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6550.12155358471728121No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6440.11951222680599861No Hit
GTGGATATTAAAACCAAAGAAGCGTACGTTA6360.11802760287052039No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6200.11505835499956388No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6160.11431604303182477No Hit
CCACCGGCCCCGCAGGCTCCGTACCAGGGCT6050.11227468512054219No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5800.10763523532217266No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT5650.10485156544315097No Hit
TCTCCGACCGAAAAAGCGGGTGCATCCGGCC5580.1035525194996075No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5560.10318136351573795No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5440.10095442761252059No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5440.10095442761252059No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5400.10021211564478144No Hit
AGCCAGCCGGATGCAGTACTGGCTGCGACTT5390.10002653765284668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)