FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461949
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT17840.3861898174906754No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10380.22470012923504543No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA7300.15802610244853868No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6670.14438823333311684No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5350.11581365042461397No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4820.10434052243862418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)