FastQCFastQC Report
Sun 21 May 2023
EGAF00007935997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527323
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9430.17882777728261426No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9090.17238011617168225No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8410.15948479394981824No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7900.1498133022834202No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7480.1418485444405042No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6200.11757499672876018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)