FastQCFastQC Report
Sun 21 May 2023
EGAF00007935999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503906
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG27120.5381956158489877No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20350.40384516159759953No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20200.400868415934718No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19150.380031196294547No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG17100.3393490055684989No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16270.32287767956722085No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15710.3117644957591297No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11740.2329799605481975No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11070.2196838299206598No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10570.20976134437772123No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9320.18495513052037485No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8970.17800939064031784No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8280.1643163605910626No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8150.16173651434989858No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7970.15816441955444072No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7040.13970859644457498No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6500.12899231205820133No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5600.11113183808091191No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5590.11093338837005315No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5450.10815509241803034No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5160.10240005080312597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)