FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503906
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45530.9035415335399857No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG27000.5358142193186824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21850.4336126182264153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20900.41475989569483196No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19200.3810234448488409No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16990.3371660587490524No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16840.33418931308617084No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12150.2411163986934071No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10840.21511948657090807No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9190.18237528427921082No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9080.18019233745976432No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9050.179596988327188No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8370.16610240798879156No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8040.1595535675304521No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7100.1408992947097276No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7030.13951014673371623No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6870.13633495135997586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5840.11589463114152242No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5780.1147039328763698No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5370.10656749473116017No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5330.10577369588772509No Hit

[OK]Adapter Content

Adapter graph