FastQCFastQC Report
Wed 31 May 2023
EGAF00007936002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491214
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45610.9285158810620219No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9640.19624847825998443No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7880.16041888056936487No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7730.15736522167527797No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6700.1363967639358813No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5280.10748879307185871No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5200.10586017499501237No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5200.10586017499501237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)