FastQCFastQC Report
Sun 21 May 2023
EGAF00007936004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503243
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44370.8816814143465483No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23590.46875962507178437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14470.2875350476807427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13330.2648819755068625No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13080.25991419652136244No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12510.24858766043442232No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12100.24044050289820226No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10330.2052686276808619No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10110.20089698217362187No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10080.20030084869536185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9550.18976915724610177No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9040.17963488811568168No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9010.17903875463742167No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7880.15658439362296148No Hit
GCCGATGGTAAAGAAGAAGAGATTAGCGTCC7340.14585399101428137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6880.13671327768096128No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6690.13293776565198126No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6570.13055323173894123No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6160.12240607420272115No Hit
CTGGCACAGTACGATGAAGACGGCAACGGCT5760.11445762782592109No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5450.10829758188390101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)