FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472784
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20970.44354292869471046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18070.38220413550373955No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16890.35724559206741346No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14430.30521337439507257No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14390.3043673220751971No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13280.28088937019865307No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12670.2679870723205523No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10210.21595485464821146No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9760.2064367660496125No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9520.20136045213035975No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7860.16624928085552812No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7370.15588513993705372No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7000.14805915597820568No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6510.13769501505973128No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6490.13727198889979358No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6340.13409929270026058No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5870.12415817794172392No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5710.12077396866222206No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5600.11844732478256456No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5510.11654370706284475No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5440.11506311550306271No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5400.11421706318318725No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5350.11315949778334292No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5180.1095637754238722No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4890.10342989610477513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)