FastQCFastQC Report
Wed 31 May 2023
EGAF00007936006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472784
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28470.6021777386713594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18240.3857998578632103No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18190.38474229246336594No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16440.34772750346881454No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15400.3257301431520525No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15120.3198077769129243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13470.28490811871806154No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12820.2711597685200853No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10510.2223002470472774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10370.2193390639277133No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10290.21764695928796238No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8620.1823242749331619No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8360.17682493485397138No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8220.17386375173440727No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7690.1626535584960574No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7150.15123185217773866No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6700.14171376357913973No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6260.13240718806050966No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6030.12754238722122577No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5860.12394666486175505No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5860.12394666486175505No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5810.12288909946191072No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5800.12267758638194186No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5730.1211969948221598No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5600.11844732478256456No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5440.11506311550306271No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5400.11421706318318725No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5340.11294798470337405No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.1101983146637788No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5110.10808318386409015No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5040.10660259230430809No Hit
GAACGTCCATCCGCCGGTGAAGCGCAGGCTC4990.10554502690446378No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCG4910.10385292226471285No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4790.10131476530508647No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4760.10068022606517987No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4750.100468712985211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)