FastQCFastQC Report
Wed 31 May 2023
EGAF00007936008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506732
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20890.41224947309425886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15200.2999613207770577No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13190.26029538296377575No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10380.20484200721485912No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10240.20207920557612308No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8440.1665574702209452No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8230.1624132677628411No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6930.13675868111743486No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6630.13083839189157187No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6530.12886496214961754No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5890.11623501180110987No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5750.1134722101623738No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5730.11307752421398293No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5700.11248549529139662No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5260.1038024044267976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)