FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517482
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17690.34184763914493643No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16490.3186584267665349No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15140.2925705628408331No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14720.2844543385083925No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13600.26281107362188444No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11550.2231961691421151No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11100.21450021450021448No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10110.19536911428803322No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10030.19382316679613976No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7440.14377311674608972No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7090.13700959646905592No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7050.1362366227231092No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6420.1240622862244484No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6340.12251633873255495No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6300.12174336498660823No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5820.1124676800352476No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5640.10898929817848738No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5630.10879605474200069No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5220.10087307384604681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)