FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554283
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28080.5066004189195772No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27390.494151904352109No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13660.246444505784951No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13550.24445995998434014No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13400.24175376116532526No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13290.2397692153647144No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13120.23670219003649762No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12630.22786194056104914No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11870.21415053321137398No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11800.21288764042916705No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11540.20819689580954134No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11180.20170201864390574No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC10760.1941246619506642No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10610.19141846313164937No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10420.18799061129423056No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10020.180774081110191No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9990.18023284134638803No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9880.17824829554577717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9700.17500085696295933No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8450.15244920013783572No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8150.14703680249980605No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG8100.14613473622680112No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7840.1414439916071754No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7580.13675324698754968No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7350.13260374213172693No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7030.1268305179844953No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6380.11510365643543101No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6350.11456241667162803No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6270.11311911063482012No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6130.11059332507040627No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6010.10842836601519441No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5830.10518092743237661No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5820.10500051417777562No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5590.10085100932195287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)