FastQCFastQC Report
Sun 21 May 2023
EGAF00007936014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503181
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACCTACTACTGATTACGGCGGTGACT11120.22099403594332853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10430.20728127651878747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10370.20608886265578388No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9610.19098495372440535No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9330.1854203556970553No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9210.1830355279710482No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.15918725071097675No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6340.12599839819071068No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6330.12579966254687677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6280.12480598432770713No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5620.11168943183466784No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5440.10811219024565713No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5430.1079134546018232No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5270.10473368430048034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)