FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464548
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43700.9406993464615068No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38750.8341441573314277No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18450.3971602503939313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16870.3631486950756434No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15920.34269870928300195No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10420.22430405469402517No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7500.16144725625769565No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6970.15003831681548516No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6700.14422621559020812No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4930.10612466311339194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)