FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490236
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38120.7775846735041898No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG22830.4656940738746236No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG20710.42244959570492574No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG16360.333716822102008No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15150.3090348322032654No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC9440.19256031788771122No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG9390.19154040094974664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.18909260029863167No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8700.17746554720583554No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6690.13646488629965975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6440.1313653016098369No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC6340.12932546773390777No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.12891750095872193No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6190.12626571692001404No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5740.11708646447833289No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5220.10647932832350135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)