FastQCFastQC Report
Sun 21 May 2023
EGAF00007936020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482041
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65751.3639918596136014No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42780.8874763764907965No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24040.49871276509674484No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17220.3572310239170527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14770.3064054717337322No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11960.24811167514796462No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11160.23151557647585996No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10930.22674419810762986No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10390.21554183150395922No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10330.21429712410355137No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10170.21097790436913044No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9790.2030947574998807No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9600.19915318406525587No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9560.19832337913165063No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9320.19334454953001923No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9220.19127003719600616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8020.16637588918784915No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7300.15143940038295498No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG6780.14065193624608693No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6470.1342209480106464No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6210.1288272159422124No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6170.12799741100860715No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6100.126545252374798No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6090.1263378011413967No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5980.12405583757398231No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5790.12011426413935744No Hit
CCACTGGGCAAAACCCCGGTTGTTTACGGCT5260.1091193487690881No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5120.1062150315014698No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC4960.10289581176704886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)